Description
List the contents of a directory and parse contained fastq files
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
r1: "$id.$key.r1"
r2: "$id.$key.r2"
lane: "$id.$key.lane"
sample: "$id.$key.sample"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/htrnaseq.git \
-revision v0.3.0 \
-main-script target/nextflow/utils/listInputDir/main.nf \
-params-file params.yaml Name | Type & Properties |
|---|---|
--input -i | file required |
--r1 | file output |
--r2 | file output |
--lane | string output |
--sample | string output |