download/sync_test_resources

Description

Synchronise the test resources from s3://openpipelines-data to resources_test

Type

bash_script

Contributors

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
input: [ "s3://openpipelines-data" ]  
output: "$id.$key.output"  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \  
  -revision 1.0.0 \  
  -main-script target/nextflow/download/sync_test_resources/main.nf \  
  -params-file params.yaml

Arguments

Name	Type & Properties	Description
--input -i	string	Path to the S3 bucket to sync from.
--output -o	file output	Path to the test resource directory.
--quiet	boolean_true	Displays the operations that would be performed using the specified command without actually running them.
--dryrun	boolean_true	Does not display the operations performed from the specified command.
--delete	boolean_true	Files that exist in the destination but not in the source are deleted during sync.
--exclude	string multiple	Exclude all files or objects from the command that matches the specified pattern.

Name

Type & Properties

--input

-i

string

--output

-o

file

output

--quiet

boolean_true

--dryrun

boolean_true

--delete

boolean_true

--exclude

string

multiple