transform/delete_layer

Description

Delete an anndata layer from one or more modalities.

Type

python_script

Contributors

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
modality: [ "rna" ]  
output: "$id.$key.output"  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \  
  -revision 1.0.4 \  
  -main-script target/nextflow/transform/delete_layer/main.nf \  
  -params-file params.yaml

Arguments

Name	Type & Properties	Description
--input -i	file required	Input h5mu file
--modality	string
--layer	string required multiple	Input layer to remove
--output -o	file required output	Output h5mu file.
--output_compression	string	The compression format to be used on the output h5mu object.
--missing_ok	boolean_true	Do not raise an error if the layer does not exist for all modalities.

Name

Type & Properties

--input

-i

file

required

--modality

string

--layer

string

required

multiple

--output

-o

file

required

output

--output_compression

string

--missing_ok

boolean_true