convert/from_h5ad_to_h5mu
Description
Converts a single layer h5ad file into a single MuData object
Arguments
Name | Type & Properties | Description |
|---|---|---|
--input -i | file required multiple | Input h5ad files |
--modality | string multiple | |
--output -o | file output | Output MuData file. |
--output_compression | string |
Run this component
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
input: [ "input.h5ad" ]
modality: [ "rna" ]
output: "$id.$key.output"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision 2.0.0 \
-main-script target/nextflow/convert/from_h5ad_to_h5mu/main.nf \
-params-file params.yaml Relationships
Used by
1 relationships
Current component
convert/from_h5ad_to_h5muopenpipeline 2.0.0
Uses
0 relationships
No component dependencies found.