Viash Hub

Description

Move a matrix from .obsm to .obs. Newly created columns in .obs will
be created from the .obsm key suffixed with an underscore and the name of the columns
of the specified .obsm matrix.

MuData Input

Name	Type & Properties	Description
--input -i	file required	Input h5mu file
--modality	string
--obsm_key	string required	Key of a data structure to move from `.obsm` to `.obs`.

Name

Type & Properties

--input

-i

file

required

--modality

string

--obsm_key

string

required

MuData Output

Name	Type & Properties	Description
--output -o	file required output	Output h5mu file.
--output_compression	string	The compression format to be used on the output h5mu object.

Name

Type & Properties

--output

-o

file

required

output

--output_compression

string

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
modality: [ "rna" ]  
output: "$id.$key.output.h5mu"  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \  
  -revision 2.0.0 \  
  -main-script target/nextflow/metadata/move_obsm_to_obs/main.nf \  
  -params-file params.yaml