openpipeline
Best-practice workflows for single-cell multi-omics analyses.
celltypist
Automated cell type annotation tool for scRNA-seq datasets on the basis of logistic regression classifiers optimised by the stochastic gradient descent algorithm.
Python
MIT
popv
Performs popular major vote cell typing on single cell sequence data using multiple algorithms.
Python
MIT
random_forest_annotation
Automated cell type annotation tool for scRNA-seq datasets on the basis of random forest.
Python
MIT
svm_annotation
Automated cell type annotation tool for scRNA-seq datasets on the basis of SVMs.
Python
MIT