Viash Hub

Name	Type & Properties	Description
--input	file required	Input h5mu file
--modality	string
--layer	string	Input layer to use as data for calculating doublets. .X is used not specified.
--output	file output	Output h5mu file.
--output_compression	string	The compression format to be used on the output h5mu object.
--obs_name_filter	string	In which .obs slot to store a boolean array corresponding to which observations should be filtered out.
--do_subset	boolean_true	Whether to subset before storing the output.
--obs_name_doublet_score	string	Name of the doublet scores column in the obs slot of the returned object.
--expected_doublet_rate	double	The estimated fraction of doublets as from the experimental setup.
--stdev_doublet_rate	double	Uncertainty in the expected doublet rate.

filter/filter_with_scrublet