Description
Run harmony integration followed by neighbour calculations, leiden clustering and run umap on the result.
Name | Type & Properties |
---|---|
--id | string required |
--input | file required |
--layer | string |
--modality | string |
Name | Type & Properties |
---|---|
--output | file required output |
Name | Type & Properties |
---|---|
--uns_neighbors | string |
--obsp_neighbor_distances | string |
--obsp_neighbor_connectivities | string |
Name | Type & Properties |
---|---|
--embedding | string |
--obsm_integrated | string |
--obs_covariates | string required multiple |
--theta | double multiple |
Name | Type & Properties |
---|---|
--obs_cluster | string |
--leiden_resolution | double multiple |
Name | Type & Properties |
---|---|
--obsm_umap | string |