Description
Converts an h5ad file or a single modality of an h5mu file into a Seurat file.
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
modality: [ "rna" ]
assay: [ "RNA" ]
output: "$id.$key.output.rds"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision v4.0.3 \
-main-script target/nextflow/convert/from_h5mu_or_h5ad_to_seurat/main.nf \
-params-file params.yaml Name | Type & Properties |
|---|---|
--input -i | file required |
--modality | string |
--assay | string |
--output -o | file required output |