Description
Test helper. Reads a modality from an output h5mu and asserts that the expected
.obs columns, .obsm keys, .obsp keys and .uns keys are all present. Raises an
error listing any missing slots.
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
modality: [ "rna" ]
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline_composed.git \
-revision v0.2.0 \
-main-script target/nextflow/test_workflows/assert_h5mu_slots/main.nf \
-params-file params.yaml Name | Type & Properties |
|---|---|
--input | file required |
--modality | string |
Name | Type & Properties |
|---|---|
--obs | string multiple |
--obsm | string multiple |
--obsp | string multiple |
--uns | string multiple |