Detects the ingestion method of a dataset.
Currently detects either 10X CellRanger Multi, 10X Xenium or Nanostring CosMx, but can be extended to other technologies upon request.

Generate an HTML report from the QC metrics

Takes H5MU files that have been ingested by CellRanger, Xenium or CosMx and processed by the QC workflow, and generates:

• A JSON file that contains the combined data for the QC report

• A JSON file that defines the layout and structure of the QC report

Run the ingestion QC report generation