Description
Remove lines from bed file that refer to off-chromosome locations
Type
bash_script
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output_bedgraph: "$id.$key.output_bedgraph"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/rnaseq.git \
-revision v0.1.0 \
-main-script target/nextflow/ucsc/bedclip/main.nf \
-params-file params.yaml Name | Type & Properties |
|---|---|
--input_bedgraph | file |
--sizes | file |
Name | Type & Properties |
|---|---|
--output_bedgraph | file output |