Description
Filters a GTF file based on sequence names in a FASTA file.
Type
python_script
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
filtered_gtf: "$id.$key.filtered_gtf"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/rnaseq.git \
-revision v0.1.1 \
-main-script target/nextflow/gtf_filter/main.nf \
-params-file params.yaml Name | Type & Properties |
|---|---|
--fasta | file |
--gtf | file |
--skip_transcript_id_check | boolean_true |
Name | Type & Properties |
|---|---|
--filtered_gtf | file output |