biobox
A curated collection of high-quality, standalone bioinformatics components built with Viash.
agat_convert_bed2gff
The script takes a bed file as input, and will translate it in gff format.
Bash
GPL-3.0
agat_convert_embl2gff
The script takes an EMBL file as input, and will translate it in gff format.
Bash
GPL-3.0
agat_convert_genscan2gff
The script takes a GENSCAN file as input, and will translate it in gff
format.
Bash
GPL-3.0
agat_convert_mfannot2gff
Conversion utility for MFannot "masterfile" annotation produced by the
MFannot pipeline.
Bash
GPL-3.0
agat_convert_sp_gff2gtf
The script aims to convert any GTF/GFF file into a proper GTF file.
Bash
GPL-3.0
agat_convert_sp_gff2tsv
The script aims to convert gtf/gff file into tabulated file.
Bash
GPL-3.0
agat_convert_sp_gxf2gxf
This script fixes and/or standardizes any GTF/GFF file into full sorted
GTF/GFF file.
Bash
GPL-3.0
agat_sp_add_introns
Add intronic elements to a gtf/gff file without intron features.
Bash
GPL-3.0