bedtools/bedtools_groupby

groupby
BED

Description

Summarizes a dataset column based upon common column groupings.
Akin to the SQL "group by" command.

Type

bash_script

License

MIT

Keywords

groupby
BED

Contributors

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
output: "$id.$key.output.bed"  
precision: [ 5 ]  
delimiter: [ "," ]  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/biobox.git \  
  -revision v0.4.2 \  
  -main-script target/nextflow/bedtools/bedtools_groupby/main.nf \  
  -params-file params.yaml  

Inputs

Name
Type & Properties
--input
-i
file
required

Outputs

Name
Type & Properties
--output
file
required
output

Options

Name
Type & Properties
--groupby
-g
-grp
string
required
--column
-c
-opCols
integer
required
--operation
-o
-ops
string
--full
boolean_true
--inheader
boolean_true
--outheader
boolean_true
--header
boolean_true
--ignorecase
boolean_true
--precision
-prec
integer
--delimiter
-delim
string

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