fq/fq_generate

FASTQ

generate

simulate

test-data

Description

Generate a random FASTQ file pair for testing and simulation purposes.

Type

bash_script

License

MIT

Keywords

FASTQ

generate

simulate

test-data

Links

Repository

Documentation

Contributors

Launch

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
r1_dst: "$id.$key.r1_dst.gz"  
r2_dst: "$id.$key.r2_dst.gz"  
record_count: [ 10000 ]  
read_length: [ 101 ]  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/biobox.git \  
  -revision v0.4.2 \  
  -main-script target/nextflow/fq/fq_generate/main.nf \  
  -params-file params.yaml

Output

Name	Type & Properties	Description
--r1_dst	file required output	Read 1 destination. Output will be gzipped if ends in `.gz`.
--r2_dst	file required output	Read 2 destination. Output will be gzipped if ends in `.gz`.

Name

Type & Properties

--r1_dst

file

required

output

--r2_dst

file

required

output

Options

Name	Type & Properties	Description
--seed -s	integer	Seed to use for the random number generator.
--record_count -n	integer	Number of records to generate.
--read_length	integer	Number of bases in the sequence.

Name

Type & Properties

--seed

-s

integer

--record_count

-n

integer

--read_length

integer