io/publish

Description

Publish the processed results of the run

Type

bash_script

License

MIT

Links

Repository

Launch

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
output: "$id.$key.output"  
output_falco: "$id.$key.output_falco"  
output_multiqc: "$id.$key.output_multiqc"  
output_run_information: "$id.$key.output_run_information"  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/demultiplex.git \  
  -revision v0.3.4 \  
  -main-script target/nextflow/io/publish/main.nf \  
  -params-file params.yaml

Input arguments

Name	Type & Properties	Description
--input	file required	Directory to write fastq data to
--input_falco	file required	Directory to write falco output to
--input_multiqc	file required	Location where to write the MultiQC report to.
--input_run_information	file required	Location where to write the run information to.

Name

Type & Properties

--input

file

required

--input_falco

file

required

--input_multiqc

file

required

--input_run_information

file

required

Output arguments

Name	Type & Properties	Description
--output	file output
--output_falco	file output
--output_multiqc	file output
--output_run_information	file output

Name

Type & Properties

--output

file

output

--output_falco

file

output

--output_multiqc

file

output

--output_run_information

file

output