htrnaseq

v0.2.0

High-throughput pipeline [WIP]

Overview

Components (13)

Releases (38)

create_eset

R

MIT

create_fdata

Create a fdata file

Python

MIT

create_pdata

Create a pdata file by combining the mapping statistics

Python

MIT

check_eset

This component test the ExpressionSet object as output by the main pipeline.

R

MIT

htrnaseq v0.2.0

parallel_map

Map wells in batch, using STAR
Spliced Transcripts Alignment to a Reference (C) Alexander Dobin
https://github.com/alexdobin/STAR

Bash

MIT

create_report

Create a basic QC report in HTML format based on a number of esets.

R

MIT

combine_star_logs

Python

MIT

generate_pool_statistics

Python

MIT

generate_well_statistics

Generate summary statistics from BAM files generated by STAR solo.

Python

MIT

htrnaseq

Nextflow

MIT

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