Description
Build a Cell Ranger-compatible reference folder from user-supplied genome FASTA and gene GTF files. Creates a new folder named after the genome.
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output.cellranger_reference"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \
-revision 1.0.2 \
-main-script target/nextflow/reference/build_cellranger_reference/main.nf \
-params-file params.yaml Name | Type & Properties |
|---|---|
--genome_fasta | file required |
--transcriptome_gtf | file required |
--output | file required output |