convert/from_10xmtx_to_h5mu

Description

Converts a 10x mtx into an h5mu file.

Type

python_script

Contributors

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
output: "$id.$key.output.h5mu"  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \  
  -revision 1.0.3 \  
  -main-script target/nextflow/convert/from_10xmtx_to_h5mu/main.nf \  
  -params-file params.yaml

Arguments

Name	Type & Properties	Description
--input -i	file required	Input mtx folder
--output -o	file output	Output h5mu file.
--output_compression	string

Name

Type & Properties

--input

-i

file

required

--output

-o

file

output

--output_compression

string