compression/tar_extract

Description

Extract files from a tar archive

Type

bash_script

Links

Repository

Launch

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
output: "$id.$key.output.output_folder"  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/openpipeline.git \  
  -revision 2.0.0 \  
  -main-script target/nextflow/compression/tar_extract/main.nf \  
  -params-file params.yaml

Arguments

Name	Type & Properties	Description
--input -i	file required	Input file
--output -o	file required output	Folder to restore file(s) to.
--strip_components -s	integer	Strip this amount of leading components from file names on extraction. For example, to extract only 'myfile.txt' from an archive containing the structure `this/goes/deep/myfile.txt', use 3 to strip 'this/goes/deep/'.
--exclude -e	string	Prevents any file or member whose name matches the shell wildcard (pattern) from being extracted.

Name

Type & Properties

--input

-i

file

required

--output

-o

file

required

output

--strip_components

-s

integer

--exclude

-e

string