dataflow/move_layer_spatialdata

Description

No description provided.

Type

python_script

Links

Repository

Contributors

Launch

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
output: "$id.$key.output"  
delete_input_layer: [ true ]  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/openpipeline_spatial.git \  
  -revision v0.5.0 \  
  -main-script target/nextflow/dataflow/move_layer_spatialdata/main.nf \  
  -params-file params.yaml

Inputs

Name	Type & Properties	Description
--input	file required	Path to the input SpatialData Zarr store
--input_layer	string	Name of the layer to move. If not provided, X will be moved.

Name

Type & Properties

--input

file

required

--input_layer

string

Outputs

Name	Type & Properties	Description
--output	file output	Path to the output SpatialData Zarr store
--output_layer	string	Name of the new layer to create with the moved data. If not provided, input layer will be moved to X.

Name

Type & Properties

--output

file

output

--output_layer

string

Options

Name	Type & Properties	Description
--delete_input_layer	boolean	Whether to delete the input layer after moving it to the new layer. If true (default), the input layer is moved to the new location, if false it is copied to the new location and the original layer is retained.

Name

Type & Properties

--delete_input_layer

boolean