yq

yaml

json

xml

csv

toml

properties

Description

A portable YAML, JSON, XML, CSV, TOML and properties processor

Type

bash_script

License

MIT

Keywords

yaml

json

xml

csv

toml

properties

Links

Repository

Documentation

Launch

Run this component

Run the following command to execute this component with Nextflow:

cat > params.yaml <<'EOM'  
output: "$id.$key.output.yaml"  
id: "run"  
publish_dir: "output/"  
EOM

nextflow run https://packages.viash-hub.com/vsh/toolbox.git \  
  -revision v0.1.1 \  
  -main-script target/nextflow/yq/main.nf \  
  -params-file params.yaml

Inputs

Name	Type & Properties	Description
--input	file required	files to be processed

Name

Type & Properties

--input

file

required

Outputs

Name	Type & Properties	Description
--output	file required output	output file

Name

Type & Properties

--output

file

required

output

Arguments

Name	Type & Properties	Description
--eval	string required	expression to evaluate
--indent -I	integer	sets indent level for output (default 2)
--input_format -p	string	parse format for input. (default "auto")
--output_format -o	string	output format type. (default "auto")
--pretty_print -P	boolean_true	pretty print, shorthand for '... style = ""'

Name

Type & Properties

--eval

string

required

--indent

-I

integer

--input_format

-p

string

--output_format

-o

string

--pretty_print

-P

boolean_true