Description
Generate statistics from a bam file.
Type
bash_script
License
GPL-3.0
Keywords
Contributors
Run the following command to execute this component with Nextflow:
cat > params.yaml <<'EOM'
output: "$id.$key.output"
id: "run"
publish_dir: "output/"
EOM
nextflow run https://packages.viash-hub.com/vsh/biobox.git \
-revision v0.4.1 \
-main-script target/nextflow/rseqc/rseqc_bamstat/main.nf \
-params-file params.yaml Name | Type & Properties |
|---|---|
--input_file -i | file required |
--mapq -q | integer |
Name | Type & Properties |
|---|---|
--output | file output |